SFKK18001U Pharmaceutical Modelling
MSc Programme in Medicinal Chemistry - elective
MSc Programme in Pharmacy (Danish programme cand.pharm) - elective
MSc Programme in Pharmaceutical Sciences (Danish programme cand.scient.pharm) - restricted elective
MSc Programme in Pharmaceutical Sciences (English programme) - restricted elective
The course focuses on mathematical models for a quantitative understanding of diverse pharmaceutically relevant problems. This includes models at different scales, both for molecular and particle level properties, interactions between molecules/particles and their interactions with the organism. The course will via 'real-life' practical examples provide the students with knowledge about the theory behind methods used for pharmaceutical modelling and simulation of system behavior. The students will be provided with input data for the different systems studied.
In the lectures, the students are introduced to the fundamental principles behind methods in pharmaceutical modelling. In the exercises, the students get hands-on experience with methods used in academia and industry and get an opportunity to apply these methods on 'real-life' problems.
The course begins with a introduction and brush-up on fundamental mathematical tools, building on the knowledge obtained during the bachelor courses, e.g. physical chemistry. We then apply and modify computer scripts that model the pharmaceutical systems, and discuss these models in relation to the literature.
The topics covered in the lectures and exercises are:
- Introduction to basic multivariate calculus and linear algebra
- Introduction to differential equations
- Model optimization
- Multivariate data analysis
- Molecular dynamics
- Image analysis
Visualization of data is an important aspect of the course.
Examples on areas covered in the lectures and exercises are:
- Interatomic forces in biological and crystalline drug systems – molecular dynamics
- Image analysis of digital images from e.g. electron microscopy studies.
- Model optimization against experimental powder diffraction data
- Multivariate methods for process analytical technology, e.g. powder diffraction, Raman and NIR spectroscopies
Objective
The course is relevant for pharmaceutical research within both drug discovery and drug development where it is important to:
- Understand the theory behind models on various levels of the drug discovery and development process
- Get hands-on experience with modern tools in pharmaceutical modelling
- Know the accuracy and applicability of mathematical models
At the end of the course, students are expected to be able to:
Knowledge
- Explain the mathematical principles behind selected methods used
- Be critical to the quality of the data and developed mathematical models
- To link modeling results and experimental work
Skills
- Develop pharmaceutical models
- Evaluate the accuracy of the models
- Have hands-on experience with mathematical and statistical software
Competences
- Apply models in pharmaceutical research and development
- Critically evaluate the usability of diverse computational platforms for pharmaceutical problems
- Select the appropriate mathematical model to solve problems in pharmaceutical sciences
No prior computer programming knowledge is needed.
Literature
Munk and Munro: Maths for chemistry. Latest edition.
Lecture notes.
Software
The students will use various types of software, primarily software used in previous courses, open source software and software used in industry.
Class room exercises: 10 hours
Computer exercises: 20 hours
Project work: 70 hours
Supervision during project work: Guidelines will be available on the course homepage
Mathematical test and oral presentation of group work.
- Category
- Hours
- Exam
- 20
- Guidance
- 6
- Lectures
- 12
- Preparation
- 70
- Project work
- 70
- Theory exercises
- 28
- Total
- 206
Open for credit transfer students and other external students. Apply here:
Credit transfer students:
http://healthsciences.ku.dk/education/other-programme-options/credit-transfer-students/
Other external students:
https://healthsciences.ku.dk/education/student-mobility/guest-students/
- Credit
- 2,5 ECTS
- Type of assessment
- Course participationContinuous assessmentIn order to obtain the course certificate the students should:
*Participate satisfactorily throughout the course.
*Complete a mathematical test on the entire curriculum to satisfaction.
*In groups prepare a written work (powerpoint or poster) within one of the four main subjects of the course. - Marking scale
- passed/not passed
- Censorship form
- No external censorship
Criteria for exam assesment
To obtain a course certificate the student must be able to:
Knowledge
- Explain the mathematical principles behind selected methods used
- Be critical to the quality of the data and developed mathematical models
- Link modeling results and experimental work
Skills
- Develop pharmaceutical models
- Evaluate the accuracy of the models
- Have hands-on experience with mathematical and statistical software
Competences
- Apply models in pharmaceutical research and development
- Critically evaluate the usability of diverse computational platforms for pharmaceutical problems
- Select the appropriate mathematical model to solve problems in pharmaceutical sciences
- Credit
- 5 ECTS
- Type of assessment
- Oral examination, 30 minutesThe oral examination is individual and without preparation.
The oral examination is based on the written group work, that the student has prepared during the course of teaching. - Aid
- Without aids
It is permitted to bring the written work on which the oral examination is based on to the examination.
- Marking scale
- 7-point grading scale
- Censorship form
- No external censorship
Criteria for exam assesment
To achieve the grade 12 the student must be able to:
Knowledge
- Explain the mathematical principles behind selected methods used
- Be critical to the quality of the data and developed mathematical models
- Link modeling results and experimental work
Skills
- Develop pharmaceutical models
- Evaluate the accuracy of the models
- Have hands-on experience with mathematical and statistical software
Competences
- Apply models in pharmaceutical research and development
- Critically evaluate the usability of diverse computational platforms for pharmaceutical problems
- Select the appropriate mathematical model to solve problems in pharmaceutical sciences
Course information
- Language
- English
- Course code
- SFKK18001U
- Credit
- See exam description
- Level
- Full Degree MasterFull Degree Master choice
- Duration
- 1 block
- Placement
- Block 1
- Schedule
- A
- Course capacity
- 54
- Continuing and further education
- Study board
- Study Board of Pharmaceutical Sciences
Contracting department
- Department of Pharmacy
Contracting faculty
- Faculty of Health and Medical Sciences
Course Coordinators
- Anders Østergaard Madsen (a.madsen@sund.ku.dk)
Lecturers
Anders Østergaard Madsen
Johan Peter Bøtker