NNMK14012U Phylogenetic and Molecular Methods

Volume 2015/2016
Education

MSc Programme in Biology

Content

The most important aspects of phylogenetics are covered through lectures and computer exercises. Students will work on phylogenetic case studies in the laboratory (doing PCR and DNA sequencing) and subsequently they will use the data for phylogenetic analysis. Through seminars the students will be trained in critical reading of phylogenetic, scientific literature.

Learning Outcome

Knowledge

  • Basic phylogenetic theory with an emphasis on parsimony based methods
  • Basic understanding of the difference between model and non-model based phylogenetic methods
  • Basic theoretical understanding of sequence alignment competences
  • Critical evaluation of phylogenetic analyses described in scientific papers
  • Design and perform a complete phylogenetic study of a group of organisms
  • Basic understanding of similarities and differences between gene and genome phylogenetics

 

  Skills

  • Perform PCR and sequencing using traditional methods
  • Use simple sequence alignment tools
  • Use the computer program TNT to perform simple phylogenetic analyses
  • Present data and phylogenetic results in a generally accepted scientific manner

Schuh, T. and Brower, A.V.Z. 2009. Biological Systematics. Principles and Applications. 2nd Ed. (Cornell University Press).
Additional manuals and scientific texts to be provided.

Lectures, exercises, seminars, presentations, and written reports.
The course is only offered every other year.
  • Category
  • Hours
  • Colloquia
  • 27
  • Lectures
  • 12
  • Practical exercises
  • 9
  • Preparation
  • 84
  • Project work
  • 74
  • Total
  • 206
Credit
7,5 ECTS
Type of assessment
Continuous assessment
Active participation in minimum 80% of the classes.
Marking scale
passed/not passed
Censorship form
No external censorship
Several internal examiners.
Re-exam

Oral re-examination 20 min without aids and no preparation time.

Criteria for exam assesment

See course objectives