NMAA08009U Statistics for Bioinformatics and eScience (StatBI/E)
Volume 2013/2014
Education
MSc Programme in
Bioinformatics
Content
The course is based
on a set of concrete cases that will take the participants though
the following content.
- Standard discrete and continuous distributions, descriptive methods, the frequency and Bayesian interpretations, conditioning, independence, and selected probability results.
- Simulation.
- Mean, variance, estimators, two-sample comparisons, multiple testing.
- Maximum likelihood and least squares estimation.
- Standard errors and confidence intervals.
- Bootstrapping.
- Correlation, linear, non-linear, logistic and Poisson regression.
- Dimensionality reduction, model selection and model validation.
- The statistical programming language R.
- Models for neuron activity, gene expression, database searches, motif and word occurrences, internet traffic, diagnostic tests etc.
Learning Outcome
Knowledge:
The basic concepts in mathematical statistics, such
as;
- Probability distributions
- Standard errors and confidence intervals
- Maximum likelihood and least squares estimation
- Bootstrapping
- Hypothesis testing and p-values
- Linear, non-linear, logistic and Poisson regression
Skills:
- Master practical implementation in R.
- Use computer simulations for computations with probability distributions, including bootstrapping.
- Compute uncertainty measures, such as standard errors and confidence intervals, for estimated parameters.
- Compute predictions based on regression models taking into account the uncertainty of the predictions.
- Assess a fitted distribution using descriptive methods.
- Use general purpose methods, such as the method of least squares and maximum likelihood, to fit probability distributions to empirical data.
- Summarize empirical data and compute relevant descriptive statistics for discrete and continuous probability distributions.
Competences:
- Formulate scientific questions in statistical terms.
- Interpret and report the conclusions of a practical data analysis.
- Assess the fit of a regression model based on diagnostic quantities and plots.
- Investigate scientific questions that are formulated in terms of comparisons of distributions or parameters by statistical methods.
- Investigate scientific questions regarding association in terms of linear, non-linear, logistic and Poisson regression models.
Academic qualifications
MSc students and BSc
students in their 3rd year with MatIntro or an equivalent
course.
Teaching and learning methods
5 hours of lectures and 3
hours of exercises per week. 7 weeks of classes.
Workload
- Category
- Hours
- Exam
- 30
- Lectures
- 35
- Practical exercises
- 21
- Preparation
- 90
- Project work
- 30
- Total
- 206
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As an exchange, guest and credit student - click here!
Continuing Education - click here!
Exam (Take-home exam)
- Credit
- 7,5 ECTS
- Type of assessment
- Written assignment, 30 hours2 days take-home assignment.
- Exam registration requirements
- Approval of a midd way group project report.
- Marking scale
- 7-point grading scale
- Censorship form
- No external censorship
Criteria for exam assesment
The student must in a satisfactory way demonstrate that he/she has mastered the learning outcome.
Course information
- Language
- English
- Course code
- NMAA08009U
- Credit
- 7,5 ECTS
- Level
- Full Degree MasterBachelor
- Duration
- 1 block
- Placement
- Block 2
- Schedule
- C
- Course capacity
- No limit
- Continuing and further education
- Study board
- Study Board of Biomolecular Sciences and Technology
Contracting department
- Department of Mathematical Sciences
Course responsibles
- Martha Muller (mmul@math.ku.dk)
m.muller@math.ku.dk
Phone +45 35 32 07 76, office 04.3.04
Phone +45 35 32 07 76, office 04.3.04
Saved on the
09-09-2013