NSCPHD1076 Bioinformatics methods for analysis of high-throughput sequencing data

Volume 2014/2015
Content

Program for course in November 10th – 14th , 2014 in Shenzhen  (Most important)

Bioinformatics methods for analysis of high-throughput sequencing data

 

Monday Nov. 10

9:00 – 9:30 Introduction to the course, Anders Krogh

9:30 – 11:30 Lectures and exercises: Methods and algorithms for mapping of high-throughput DNA sequencing reads. Anders Krogh

11: 30 – 13:30 Lunch break, exercises, discussions, Q&A

13:30 – 15:00 Lecture continues

Research seminar: Anders Krogh: Mapping of short tags (BWA-PSSM)

15:00 – 16:00 Research lecture: Introduction to the latest achievement of Bioinformatics software (Ruibang Luo)

16:00 – 18:00 Lectures and exercises: Genome Assembly (Li Shuaicheng)

18:00 – 19:00 Dinner

 

Tuesday Nov. 11  Genome assembly & Variant calling

9:00 –10:30 Lectures and exercises continues: Genome Assembly (Li Shuaicheng)

10:30 –11:30 Research seminar on Genome assembly (Li Shuaicheng)                 

11:30 – 13:30 Lunch break, exercises, Q&A

13:30 –14:30 Research seminar:  Discovery, genotype and characterization of structural variants and novel sequence at single nucleotide resolution from de novo assemblies on a population scale (Siyang Liu)

14: 30– 16:30 Lectures and exercises: Variant discovery, genotyping and phasing ; GWA studies (Qibin Li)

16:30 –17:30 Research seminar: Research seminar on variation analysis (Fuman Jiang)

18:00 – 19:00 Dinner

 

Wednesday Nov. 12

9:00 –10:30 Lectures and exercises on Cancer genomics (Gao Zhibo)

10:30 – 11:30 Research seminar on Cancer genomics (Li Xiangchun)

11:30 – 13:30 Lunch break, exercises, Q&A

13:30 – 15:00 Research lecture on Cancer genomics (Anders Skanderup)

15:00 – 17:00 Lectures, exercises, research lectures: Metagenomics (Junhua Li & Peter Menzel)

17: 00 – 18:00 Research lecture on Metagenomics (Qiang Feng)

18:00 – 19:00 Dinner

 

Thursday Nov. 13              

9:00 – 10:30  BGI-trip (xiaodong)

10:45 –12:00  Jun Wang’s talks

11:30 – 13:30 Lunch break, exercises, Q&A

13:30 - 15:30 Research lecture:  Agriculture application (Shancen Zhao)

15:30 – 16:30Research lecture: Medical application (Jiang Hui)

16:30 – 17:30 Research seminar: TBD (Yong Hou)

18:00 – 19:00 Dinner

 

Friday Nov. 14           

9:00 –11:30 Lectures, exercises, research lecture: RNA-seq analysis (Lasse & Jonas)

 Split-read mapping, differential gene expression analysis, transcriptome assembly and quantification.

12:00 – 14:00 Lunch break, exercises, Q&A

14:00 – 15:30 XunXu’s talk

18:00 Dinner

 

Saturday Nov. 15

Excursion to ChinaTown and Splendid China (Student Delegate)

Lectures, exercises and research lectures
  • Category
  • Hours
  • Class Instruction
  • 20
  • Exam
  • 68
  • Practical exercises
  • 20
  • Preparation
  • 98
  • Total
  • 206
Credit
5 ECTS
Type of assessment
Written assignment
Criteria for exam assesment

5 ECTS to participants who just participate in the lessons

7,5 ECTS to participants who participate in the lessons and hand in an assignment