NSCPHD1076 Bioinformatics methods for analysis of high-throughput sequencing data
Program for course in November 10th – 14th , 2014 in Shenzhen (Most important)
Bioinformatics methods for analysis of high-throughput sequencing data
Monday Nov. 10
9:00 – 9:30 Introduction to the course, Anders Krogh
9:30 – 11:30 Lectures and exercises: Methods and algorithms for mapping of high-throughput DNA sequencing reads. Anders Krogh
11: 30 – 13:30 Lunch break, exercises, discussions, Q&A
13:30 – 15:00 Lecture continues
Research seminar: Anders Krogh: Mapping of short tags (BWA-PSSM)
15:00 – 16:00 Research lecture: Introduction to the latest achievement of Bioinformatics software (Ruibang Luo)
16:00 – 18:00 Lectures and exercises: Genome Assembly (Li Shuaicheng)
18:00 – 19:00 Dinner
Tuesday Nov. 11 Genome assembly & Variant calling
9:00 –10:30 Lectures and exercises continues: Genome Assembly (Li Shuaicheng)
10:30 –11:30 Research seminar on Genome assembly (Li Shuaicheng)
11:30 – 13:30 Lunch break, exercises, Q&A
13:30 –14:30 Research seminar: Discovery, genotype and characterization of structural variants and novel sequence at single nucleotide resolution from de novo assemblies on a population scale (Siyang Liu)
14: 30– 16:30 Lectures and exercises: Variant discovery, genotyping and phasing ; GWA studies (Qibin Li)
16:30 –17:30 Research seminar: Research seminar on variation analysis (Fuman Jiang)
18:00 – 19:00 Dinner
Wednesday Nov. 12
9:00 –10:30 Lectures and exercises on Cancer genomics (Gao Zhibo)
10:30 – 11:30 Research seminar on Cancer genomics (Li Xiangchun)
11:30 – 13:30 Lunch break, exercises, Q&A
13:30 – 15:00 Research lecture on Cancer genomics (Anders Skanderup)
15:00 – 17:00 Lectures, exercises, research lectures: Metagenomics (Junhua Li & Peter Menzel)
17: 00 – 18:00 Research lecture on Metagenomics (Qiang Feng)
18:00 – 19:00 Dinner
Thursday Nov. 13
9:00 – 10:30 BGI-trip (xiaodong)
10:45 –12:00 Jun Wang’s talks
11:30 – 13:30 Lunch break, exercises, Q&A
13:30 - 15:30 Research lecture: Agriculture application (Shancen Zhao)
15:30 – 16:30Research lecture: Medical application (Jiang Hui)
16:30 – 17:30 Research seminar: TBD (Yong Hou)
18:00 – 19:00 Dinner
Friday Nov. 14
9:00 –11:30 Lectures, exercises, research lecture: RNA-seq analysis (Lasse & Jonas)
Split-read mapping, differential gene expression analysis, transcriptome assembly and quantification.
12:00 – 14:00 Lunch break, exercises, Q&A
14:00 – 15:30 XunXu’s talk
18:00 Dinner
Saturday Nov. 15
Excursion to ChinaTown and Splendid China (Student Delegate)
- Category
- Hours
- Class Instruction
- 20
- Exam
- 68
- Practical exercises
- 20
- Preparation
- 98
- Total
- 206
- Credit
- 5 ECTS
- Type of assessment
- Written assignment
Criteria for exam assesment
5 ECTS to participants who just participate in the lessons
7,5 ECTS to participants who participate in the lessons and hand in an assignment
Course information
- Language
- English
- Course code
- NSCPHD1076
- Credit
- 5 ECTS
- Level
- Ph.D.
- Placement
- Autumn
- Schedule
- 10 to 14 November 2014
- Study board
- Natural Sciences PhD Committee
Contracting department
- Department of Biology
Course responsibles
- Anders Krogh (6-69737a776f70486a717736737d366c73)
Lecturers
Main lecturers:
Anders Krogh, Professor, KU
Shuai Cheng Li, Associate Professor, City University of Hong Kong
Qibin Li, Ph.D., BGI
Junhua Li, Ph.D., BGI
Peter Menzel, Postdoc, KU
Research lectures:
Anders Jacobsen Skanderup, KU
Lasse Maretty, KU
Jonas Sibbesen, KU
Ruibang Luo, BGI
Gao Zhibo, BGI
Siyang Liu, BGI
Fuman Jiang, BGI
Li Xiangchun, BGI